<?php
  ///////////////////////////////////////////////////////////////////////////////
  // UT Genome Browser Configurations
  ///////////////////////////////////////////////////////////////////////////////

  // base_url
  $htdocs_path="/home/sesejun/public_html/gcap/genome_browser";

  //utgb_DB_user
  $utgb_DB_user = "postgres";

  // replica host of CacheDB
  $utgb_cachedb_insert_host = "";
  $utgb_cachedb_public_host = "localhost";

  // DB configurations.
  $acceptspecies_connection_string  = 'dbname=yeast_acceptspecies user=browser';
  $targetsequence_connection_string = 'dbname=yeast_targetsequence user=browser';
  $keywordsearch_connection_string  = 'dbname=yeast_keywordsearch user=browser';
  $synteny_connection_string        = 'dbname=yeast_synteny user=browser';
  $session_connection_string        = 'dbname=yeast_session user=browser';
  $trackinformation_connection_string  = "dbname=yeast_trackinfo user=$utgb_DB_user";

  // OpenSSL configurations.
  $openssl_certs_dir = './certs/';
  $openssl_privatekey_filename  = 'privatekey';
  $openssl_certificate_filename = 'certificate';
  $openssl_certreq_filename     = 'certreq';
  $openssl_privatekey_password  = 'nlutriuBrlaphiaylejoe9riurlAdr4u';
  $openssl_expiration = 100 * 365;

  $openssl_dn = array(
    'countryName' => 'XX',
    'stateOrProvinceName' => 'State',
    'localityName' => 'SomewhereCity',
    'organizationName' => 'MySelf',
    'organizationalUnitName' => 'Whatever',
    'commonName' => 'mySelf',
    'emailAddress' => 'user@domain.com'
  );

  // Font File
  $utgb_font_Abadi_file = './fonts/Abadi MT Condensed Light.ttf';
  $utgb_font_Abadi_file = realpath($utgb_font_Abadi_file);
  if ($utgb_font_Abadi_file == "") {
    // call from renderer
    $utgb_font_Abadi_file = '../fonts/Abadi MT Condensed Light.ttf';
    $utgb_font_Abadi_file = realpath($utgb_font_Abadi_file);
  }

  // Cache Directory
  $utgb_cache_dir = './cache';
  $utgb_cache_real_dir = realpath($utgb_cache_dir);

  if ($utgb_cache_real_dir == "") {
    // call from renderer
    $utgb_cache_dir = '../cache';
    $utgb_cache_real_dir = realpath($utgb_cache_dir);
  }
  $utgb_cache_binary_dir = $utgb_cache_real_dir.'/binary';
  $utgb_cache_add_track_file = $utgb_cache_binary_dir.'/addtrack';
  $utgb_cache_search_gene_file = $utgb_cache_binary_dir.'/testgene';
  $utgb_cache_search_graph_file = $utgb_cache_binary_dir.'/testgraph';
  $utgb_cache_search_color_file = $utgb_cache_binary_dir.'/testcolor';

  $utgb_cache_graphcolor_dir = './CacheData/';

  // EasyTrack File Upload Directory
  $utgb_uploaded_easytrack_dir = './uploaded_easytrack';
  $utgb_uploaded_easytrack_dir = realpath($utgb_uploaded_easytrack_dir);

  // Log Directory
  $utgb_log_dir = './log';
  $utgb_log_dir = realpath($utgb_log_dir);

  // PostgreSQL installed directory
  $utgb_postgre_install_dir = "/usr";

  // undisplay_modify
  $disable_modify['BaseColor'] = 1 ;

  // sary index
  $sary_path                        = '/usr/local/bin/sary';
  $sary_index_directory             = './sary_index';
  $sary_index_filename_prefix       = 'keyword_kid_where_kkkid_';
  $sary_index_filename_suffix       = '.txt';
  $sary_index_filename_index_suffix = '.txt.ary';
?>