.PHONY: all clean clean-db clean-sql keyword
OUT = target

all:
	ruby retrieve.rb

clean:
	rm -rf $(OUT)

clean-db:
	rm -f $$(find $(OUT) -name "*.db")

clean-sql:
	rm -f $$(find $(OUT) -name "*.sql*")

keyword: $(OUT)/refseq_keyword.db

$(OUT)/refseq_keyword.db: $(OUT)/refseq_entry.dat refseq_keyword.sql
	rm -f $@
	sqlite3 $@ < refseq_keyword.sql


$(OUT)/refseq_entry.dat:
	./collect_refseq.sh >> $@